Weird...
I know some newer audio rippers will balk at TG-16/PCE discs due to their peculiar, data>audio>data structure.
However, I used to use CDR Win, which is a stone age, Win 95/98, program (it's actually what became Nero, I think) because it would let me skip the data tracks. I used this program to rip my TG-16 to wav format years ago. I would then use a text based (way slow to do, but it let me encode at 320kbs) mp3 encoder, called Plugger, that worked by typing up command lines in Notepad, then saving and running it as at .bat file. Worked nice, but it required the DOS based encoding screen to be on top of your desktop as it ran, or else it would grind to a halt, not to mention clog up your system resources.
More to the point, I'm now using Audiograbber (excellent freeware, ripper+encoder as long as you drop the LAME codec into it; it can encode up to 320kbs VBR this way too) and I just ripped Flash Hiders to mp3 format yesterday.
I manually told it to skip the first data track (track 2) but forgot about the last data track (some cds have it, others don't) and I nearly got my ears blown out because it encoded that last data track as well.
All I can say is, OUCH!
Oh, the other reason I switched to Audiograbber was because it ignores those annoying copy protection files that Avec cds so love to use. CDR Win won't ignore those for some reason, and it also won't rip cds that have CD+EX files, or any other extra programs on them (like the Windows goodies on the first Pso cd, or the patch files on the Deus EX ost). I'm toying with Total Audio Converter right now (I needed some APE files converted to mp3) but I'm not happy that it won't do (at least how I can figure out) 320kbs in VBR, but it will do 320kbs at constant bitrate.
Yeah, I'm a slore for archival-quality mp3.
Ooops, I forgot to mention I'm unsure of how to encode for Itunes. Isn't that mp4? Can't you just rip to wav first, then encode the files? Or does Itunes make you use its software to rip and encode the files? It still sounds odd that trying to do that would cause damage to your cd. Then again, i have two friends who got burned and/or shafted by Apple and their Ipods, so I bought a San Disc Sansa player.